BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003H09LP1|AL425203
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1116 1340 0.0
>3x_Contig1116
Length = 5699
Score = 1340 bits (668), Expect = 0.0
Identities = 866/923 (93%), Gaps = 21/923 (2%)
Strand = Plus / Minus
Query: 3 tctaacgatcgtncaaacattgttccaaaacaacatcacatcttcggattctgcaaagga 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 tctaacgatcgtacaaacattgttccaaaacaacatcacatcttcggattctgcaaagga 1222
Query: 63 agcatttgamgatttgacaactttmatcactgtttcagaatgatccatcgcacagtyata 122
||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||| |
Sbjct: 1221 agcatttgaagatttgacaactttaatcactgtttcaga-tgatccatcg-acagt---a 1167
Query: 123 tagactacmgtcgctggtatggctaacagtacaagcmcttttgctagtcaaatcctatga 182
| |||||| ||||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct: 1166 ttgactacagtcgctggtatggctaacagtacaagcacttttgctagtcaa-tcat-tga 1109
Query: 183 ccgctttggcgccagtcatcagtgcctgctaagaaatgacacgattaggatcattgaccm 242
||||||||| || ||||||| |||||||||||||| ||| ||| | | || ||||||
Sbjct: 1108 ccgctttggagcaagtcatc-gtgcctgctaagaa-tgaaacgtt---ggtc-ttgacca 1055
Query: 243 ctatcaagccaaattgccaacctcatttgtcgcaaagtactaccgacamacaagagccaa 302
|||||| ||||| |||| |||||| ||||||||||||||||||||| | |||||||| ||
Sbjct: 1054 ctatca-gccaa-ttgcaaacctc-tttgtcgcaaagtactaccgaaaaacaagagcaaa 998
Query: 303 tggatgcattattctctttgcttcacgcttcttctgaccctactggctctttcaaggcgt 362
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 997 tggatgcattattctctttgcttcacgcttcttctgaacctactggctctttcaaggcgt 938
Query: 363 tgatggaattgacagctattgcacaatctaacccccccttgttcaccccaatcttgggat 422
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 937 tgatggaattgacagctattgcacaatctaacccaaccttgttcaccccaatcttgggat 878
Query: 423 tcctacaggctgctggctcctctgaagaagtaatcaccgaagatgatatccatgaaatac 482
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 877 tactacaggctgctggctcctctgaagaagtaatcaccgaagatgatatcaatgaaat-c 819
Query: 483 atgccagatatcttatcttatttgamcatcgctgaacgtttcagattagggatcttctcg 542
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 818 atgccagatatcttatcttatttgaacatcgctgaacgtttcagattagggatcttctcg 759
Query: 543 tactgccgtgtctcttctgatggcgatgtcttatcttgttccaacccacacgccgttcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tactgccgtgtctcttctgatggcgatgtcttatcttgttccaacccacacgccgttcaa 699
Query: 603 ggcttgggtatgacggcgattttgtacacatgaattggagaactcagacttcagncctta 662
||||||| ||||| || |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 698 ggcttggatatgaaggagattttgtacac-tgaattggagaactcagacttcagacctta 640
Query: 663 cattgcacaagccttgaacawctccaaggacgacatcawcttggtcggtaagttaccaga 722
| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 639 c-ttgca--agcattgaacatctccaaggacgacatcatcttggtcggtaagttaccaga 583
Query: 723 cagagagcatgagtataagccagccgttaaarcagtmttggctttgaatttgttgtctat 782
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 582 cagagagcatgagtataagccagccgttaaagcagtcttggctttgaatttgttgtctat 523
Query: 783 catcatcgcwttcttctwactcattgccatcatactatccttcttctamatgttgactgg 842
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 522 catcatcgctttcttcttactcattgccatcatactatccttcttctacatgttgactgg 463
Query: 843 taaaattactagatggtttgcaagagttttggctatgtgccttgctctattctctgtatt 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taaaattactagatggtttgcaagagttttggctatgtgccttgctctattctctgtatt 403
Query: 903 gggggccatcatctctgtwgtcg 925
|||||||||||||||||| ||||
Sbjct: 402 gggggccatcatctctgttgtcg 380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4572
Number of Sequences: 1807
Number of extensions: 4572
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.8 bits)